de novo Assembly

Deliverables are:

1. All assembled contigs in FASTA format (text document). Minimal contigs size is 100b (or user defined).

Additional deliverables are:

2. Summary Report (HTML document, PDF document), including Quality and Assembly Reports.

3. Nucleotide-by-nucleotide coverage of each assembled contig, where all the available reads are mapped perfectly (without mismatches), as well as mapped with 1 mismatch (text or Excel 2007 file).

4. Table containing average number of reads mapped to each individual assembled contig, perfectly as well as mapped with 1 mismatch,in a 500b moving window (or customer defined. text or Excel 2007 file).

5. Upon request, report (HTML document) containing results of BLASTnr and BLASTX search against GenBank for all 200+b contigs.

6. Upon request, text file containing all reads not mapped to any of assembled contigs with up to 1 mismatch.