Analysis of the genomic material not present in the reference sequence(s)

Deliverables are:

1. Sequencing Reads Quality Report (HTML document);

2. Nucleotide-by-nucleotide coverage of the reference sequence by original and trimmed (if requested) sequencing reads mapped to each strand of the reference sequence perfectly (without mismatches), as well as mapped with up to 1 mismatch (text or Excel 2007 file);

3. Table containing average number of reads mapped to each individual or both strands (customer defined) of the reference sequence perfectly as well as mapped with 1 mismatch, in a 500b moving window (or customer defined text or Excel 2007 file);

4. Text file containing all reads not mapped to any of reference sequences with up to 1 mismatch;

5. All assembled contigs in FASTA format (text document). Minimal contigs size is 100b (or user defined);

6. Nucleotide-by-nucleotide coverage of each assembled contig, where all the available reads are mapped perfectly (without mismatches), as well as mapped with 1 mismatch (text or Excel 2007 file);

7. The table containing average number of reads mapped to each assembled contig perfectly (without mismatches) as well as mapped with 1 mismatch, in a 500b moving window (or customer defined; text or Excel 2007 file);

8. Upon request, report (HTML document) containing results of BLASTnr and BLASTX search against GenBank for all 100+b contigs (available by request);

9. Upon request, text file containing all reads not mapped to any of assembled contigs with up to 1 mismatch.