Resequencing and mapping
Clients can use Eureka Genomics® Next Generation
Bioinformatics Service to map short sequencing reads to reference genome(s).
If no reference genome is known the reads can be mapped to near neighbors.
To give you a better understanding of this service, view a
short presentation (PDF) about
re‐sequencing and mapping of microbial and viral genomes.
Contact us for
further information, sample quotes and examples of the deliverables.
All the sequencing reads will be mapped to any number of reference
sequences (no size limitation). The customer provides reference sequences
(genes, genomes, draft assemblies) and/or chooses reference sequences from
the Eureka Genomics’ collection containing 50+ eukaryotic, 500+
prokaryotic, and 100,000+ viral genomes. Mapping can be performed with
exact (perfect) matches, as well as with mismatches (insertions,
deletions, and substitutions in all possible combination).
Read more about the description of the deliverables.
Major applications of this analysis include:
- Reference based genome re-sequencing, where sequenced genomic DNA is mapped to the reference genome(s);
- Reference based digital gene expression, where sequenced cellular RNA is mapped to the reference genome(s) and/or transcriptome(s) to identify (using density of the reads mapped) the expression level across the reference genome and/or transcriptome.
- Mapping-based genome assembly.
Eureka Genomics is currently working on a project to discover:
- The source of viral variation
Eureka Genomics Corporation: 410 Pierce Street, Ste. 307, Houston, TX 77002 | 750 Alfred Nobel Drive, Hercules, CA 94547
Phone: (510) 964-0461 | Fax: (510) 964-9705 | Email: contact@eurekagenomics.com